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GPS-Based Soil Fertility Mapping of a Development Block: Macro- and Micronutrient Status with Ordinary Kriging

  • 12 slides
  • 15 viva questions
  • 6 modules
  • No code needed

@gps-soil-fertility-mapping-block-krigingUpdated Oct 2026

An M.Sc (Agri) Soil Science thesis — grid sampling, standard lab methods, nutrient index and kriged maps in R and QGIS

M.Sc Agriculture, Soil Science · Sem 3–4 · Advanced · 26 weeks · Solo

More info
Level
Advanced · 26 weeks · Solo
Relevant for
All India
Common at
ICAR (6th Deans' Committee) — adopted by State Agricultural Universities, Odisha University of Agriculture & Technology
Syllabus
ICAR 6th Deans' Committee · Master's Research (thesis) — ICAR PG curriculum · Semester 3–4
Tech stack
  • Handheld GPS / GNSS receiver
  • Soil-sampling protocol (0–15 cm, grid-based)
  • pH & EC meters, spectrophotometer, flame photometer, AAS, Kjeldahl distillation
  • R — gstat, sp/sf, ggplot2
  • QGIS
  • MS Excel
  • OPSTAT
For educational purposes only

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  1. Pinned

    1 min

    Overview

    This M.Sc (Agriculture) thesis in Soil Science and Agricultural Chemistry builds a GPS-referenced soil fertility map of one development block, so that fertiliser advice can move from district-wide blanket recommendations to village- and field-scale guidance.

    About 150 surface soil samples (0–15 cm) are collected on a roughly 1 km grid with GPS coordinates recorded at every point, and analysed in the departmental laboratory by standard methods: pH and EC (1:2.5 soil–water), organic carbon by Walkley–Black wet oxidation, available N by the alkaline permanganate method (Subbiah & Asija, 1956), available P by Olsen's method (Olsen et al., 1954) — or Bray's method for acid soils — available K by neutral normal ammonium acetate with flame photometry, available S by CaCl₂ extraction with turbidimetry, and DTPA-extractable Zn, Fe, Cu and Mn (Lindsay & Norvell, 1978) on an AAS.

    Results are classified as low, medium or high using the ratings adopted for Soil Health Cards, summarised by Parker's nutrient index, related to each other by correlation, and then interpolated with ordinary kriging in R (gstat) after semivariogram modelling, with maps finished in QGIS. The thesis ends with nutrient-deficiency maps and zone-wise fertiliser recommendations.

    The bundle provides the sampling protocol, lab method list with citations, rating tables, geostatistical workflow, thesis chapter plan, a 12-slide seminar outline and a viva bank. No analytical values are included — your lab data make the thesis.

    Syllabus alignment

    ICAR · 6th Deans' Committee

    Master's Research (thesis) — ICAR PG curriculum · Semester 3–4 · 20 credits

    Subjects this project applies
    • Soil Fertility and Fertiliser Use
    • Soil Chemistry
    • Analytical Techniques and Instrumental Methods in Soil and Plant Analysis
    • Remote Sensing and GIS Techniques for Soil and Crop Studies
    • Soil Genesis, Survey and Classification
    How it is evaluated

    See your department's project guidelines.

    1 min read · 15 viva questions

  2. 2 min

    Synopsis

    Abstract

    Soil nutrient status varies considerably within short distances because of parent material, topography, cropping history and fertiliser practices, yet fertiliser recommendations are often made for large areas. This study assesses the fertility status of surface soils of a development block using GPS-referenced grid sampling, standard laboratory methods for pH, EC, organic carbon, available N, P, K and S and DTPA-extractable micronutrients, and maps their spatial variability using ordinary kriging. Nutrient index values summarise block-level fertility, and deficiency maps support site-specific nutrient recommendations.

    Introduction

    The Soil Health Card scheme made soil testing a national programme, and GPS-based sampling allowed results to be tied to locations. Geostatistics adds a further step: from point values it estimates nutrient levels at unsampled locations along with the uncertainty of those estimates, producing continuous maps that planners and extension workers can use.

    Review gap

    Many fertility-status studies report only means and percentage deficiency, without describing spatial structure. Where kriged maps exist, they are often at district scale, too coarse for block-level extension planning, or cover only macronutrients. A block-level study covering macro- and micronutrients with semivariogram analysis fills this gap for the selected area.

    Hypotheses

    • Available nutrients and organic carbon show moderate-to-strong spatial dependence at the block scale.
    • A measurable proportion of the block is deficient in at least one micronutrient, particularly zinc.
    • Soil pH and organic carbon are significantly correlated with the availability of several nutrients.

    Feasibility

    • Laboratory: all methods use standard equipment in SAU soil-testing labs.
    • Software: R and QGIS are free.
    • Field: a block of this size can be sampled in three to four weeks after kharif harvest with a field assistant.
    • Time: 26 weeks, including ORW approval, sampling, analysis, mapping and thesis writing.
    • Economic: chemicals, AAS time and fuel for field travel are covered by the departmental PG contingency grant; no special equipment has to be purchased.
  3. 1 min

    Problem statement

    Farmers in the study block apply fertilisers largely by habit or by blanket recommendations, often over-applying nitrogen while ignoring secondary and micronutrients. Soil test data exist as individual cards, but they are rarely combined into maps that show where deficiencies cluster and how nutrient levels change across the block. Without spatial information, extension workers cannot prioritise villages for zinc or sulphur application or target organic-matter improvement where carbon is lowest.

    This thesis addresses that gap by collecting GPS-referenced surface soil samples across the block, analysing them for major, secondary and micronutrients with standard methods, quantifying spatial variability with semivariograms, and producing kriged fertility and deficiency maps with zone-wise fertiliser recommendations that the KVK and the agriculture department can use.

  4. 1 min

    Objectives & scope

    1. 01To collect GPS-referenced surface soil samples (0–15 cm) on a grid across the selected block.
    2. 02To determine pH, EC, organic carbon, available N, P, K, S and DTPA-extractable Zn, Fe, Cu and Mn by standard methods.
    3. 03To classify soils into low, medium and high fertility classes and compute nutrient index values.
    4. 04To study relationships between soil properties and nutrient availability through correlation analysis.
    5. 05To characterise spatial variability using semivariograms and prepare kriged fertility maps.
    6. 06To delineate nutrient-deficient zones and suggest zone-wise fertiliser recommendations.

    Scope

    In scope

    • One development block; about 150 surface samples on an approximately 1 km grid, adjusted to cultivated fields.
    • Chemical fertility parameters listed in the objectives; soil texture by feel/hydrometer for a subset as supporting data.
    • Descriptive statistics, correlation, nutrient index, geostatistics (ordinary kriging) and GIS mapping.

    Out of scope

    • Subsurface horizons and full soil profile classification.
    • Plant tissue analysis and crop-response trials to recommended doses.
    • Remote-sensing prediction of nutrients from satellite imagery (noted as future scope).
    • Heavy-metal contamination assessment.
  5. 2 min

    Methodology

    Research design

    A descriptive, spatial survey design: systematic grid sampling, laboratory analysis, classical statistics and geostatistical interpolation.

    Study area and sampling

    • Block selected in consultation with the advisory committee and the district agriculture office; boundary from official administrative data digitised in QGIS.
    • Grid: a 1 km × 1 km fishnet in QGIS; one composite sample per cell from a cultivated field nearest the cell centre.
    • Composite: 8–10 cores in a zig-zag pattern from 0–15 cm with a stainless-steel auger (avoiding bunds, manure pits and recently fertilised spots), mixed, quartered to about 500 g.
    • Records: GPS latitude/longitude, village, crop grown, irrigation source, date. Samples coded S001–S150.
    • Timing: after kharif harvest, before rabi fertiliser application.

    Laboratory methods

    ParameterMethodReference
    pH, EC1:2.5 soil:water, glass electrode / conductivity meterJackson (1973)
    Organic carbonWet oxidationWalkley & Black (1934)
    Available NAlkaline KMnO₄Subbiah & Asija (1956)
    Available P0.5 M NaHCO₃ (pH 8.5)Olsen et al. (1954); Bray & Kurtz (1945) for acid soils
    Available KNeutral 1 N NH₄OAc, flame photometerHanway & Heidel (1952)
    Available S0.15% CaCl₂ extraction, turbidimetryWilliams & Steinbergs (1959); Chesnin & Yien (1950)
    Zn, Fe, Cu, MnDTPA extraction, AASLindsay & Norvell (1978)

    Quality control: reagent blanks, duplicates for every tenth sample and a laboratory reference soil in each batch.

    Analysis

    1. Descriptive statistics, CV, skewness; log-transform skewed variables.
    2. Rating into low/medium/high; nutrient index = (1×Nl + 2×Nm + 3×Nh) ÷ Nt (Parker et al., 1951); < 1.67 low, 1.67–2.33 medium, > 2.33 high.
    3. Pearson correlation among properties.
    4. Semivariogram modelling (spherical, exponential, Gaussian), nugget:sill ratio for spatial dependence (Cambardella et al., 1994: < 25% strong, 25–75% moderate, > 75% weak).
    5. Ordinary kriging; leave-one-out cross-validation (ME, RMSE).
    6. Classified maps and deficiency-area statistics in QGIS.

    Timeline (26 weeks)

    WeeksActivity
    1–4Review, ORW approval, grid design
    5–8Field sampling, drying, sieving (2 mm)
    9–16Laboratory analysis
    17–20Statistics, geostatistics, maps
    21–24Thesis writing
    25–26Pre-submission seminar, submission, viva
  6. 1 min

    Architecture & tech stack

    • Handheld GPS / GNSS receiver
    • Soil-sampling protocol (0–15 cm, grid-based)
    • pH & EC meters, spectrophotometer, flame photometer, AAS, Kjeldahl distillation
    • R — gstat, sp/sf, ggplot2
    • QGIS
    • MS Excel
    • OPSTAT

    The study moves from a GIS grid to field samples, lab values, statistics and back to GIS as kriged maps.

    flowchart TD
      A["Block boundary and 1 km grid in QGIS"] --> B["GPS-referenced composite sampling, 0-15 cm"]
      B --> C["Air-dry, grind, sieve 2 mm, label S001-S150"]
      C --> D["Lab analysis: pH, EC, OC, N, P, K, S"]
      C --> E["DTPA micronutrients: Zn, Fe, Cu, Mn on AAS"]
      D --> F["QC: blanks, duplicates, reference soil"]
      E --> F
      F --> G["Descriptive statistics and correlation"]
      G --> H["Ratings and Parker nutrient index"]
      G --> I["Semivariogram fitting in R gstat"]
      I --> J["Ordinary kriging and cross-validation"]
      J --> K["Classified maps in QGIS"]
      H --> L["Deficiency zones and fertiliser recommendations"]
      K --> L

    Rating limits used (Soil Health Card norms, verify with your SAU)

    ParameterLowMediumHigh
    Organic carbon (%)< 0.500.50–0.75> 0.75
    Available N (kg/ha)< 280280–560> 560
    Available P (kg/ha)< 1010–25> 25
    Available K (kg/ha)< 110110–280> 280

    Micronutrient critical limits (DTPA): Zn 0.6, Fe 4.5, Cu 0.2 and Mn 2.0 mg/kg; S critical limit 10 mg/kg.

    Geostatistics in R

    library(sf); library(gstat)
    pts <- st_as_sf(soil, coords = c("lon", "lat"), crs = 4326) |> st_transform(32644)
    v <- variogram(log(Zn) ~ 1, pts)
    m <- fit.variogram(v, vgm(c("Sph", "Exp", "Gau")))
    cv <- krige.cv(log(Zn) ~ 1, pts, m)
    zk <- krige(log(Zn) ~ 1, pts, grid, model = m)
    

    Use the UTM zone that covers your block; back-transform log-kriged values before classifying.

  7. 6 modules

    Modules

    • Grid Design and Field Sampling

      Digitise the block boundary, generate the 1 km grid in QGIS, locate a cultivated field near each cell centre, collect 8–10 core composites at 0–15 cm, and record GPS, crop, irrigation and date on a field sheet.

    • Sample Processing and Laboratory Analysis

      Air-dry, grind and sieve samples, then determine pH, EC, OC, available N, P, K and S and DTPA micronutrients by the cited methods, with blanks, duplicates and a reference soil in every batch.

    • Fertility Classification and Nutrient Index

      Rate each sample low, medium or high against Soil Health Card limits and critical levels, compute the percentage of samples in each class and Parker's nutrient index for every nutrient at block level.

    • Statistical Relationships

      Compute descriptive statistics and coefficients of variation, test normality and transform skewed variables, and run Pearson correlations between pH, EC, OC and nutrient availability.

    • Geostatistics and Mapping

      Fit experimental semivariograms, compare spherical, exponential and Gaussian models, assess spatial dependence from nugget-to-sill ratios, krige, cross-validate and produce classified maps in QGIS.

    • Recommendations

      Overlay deficiency maps to delineate management zones and propose zone-wise fertiliser, micronutrient and organic-matter recommendations for the agriculture department and KVK.

  8. Locked

    Presentation

    12 slides with speaker notes. The outline below is free; the bullets, notes and the generated .pptx unlock with the project.

    1. GPS-Based Soil Fertility Mapping of <Block>
    2. Why Map Soil Fertility
    3. Objectives
    4. Study Area
    5. Sampling Protocol
    6. Laboratory Methods
    7. Soil Properties
    8. Fertility Classes and Nutrient Index
    9. Correlations
    10. Semivariograms
    11. Kriged Maps
    12. Conclusions and Recommendations

    Bullets, speaker notes and the .pptx download unlock with the project.

    Presentation is locked: 12 slides, Speaker notes, .pptx download.

  9. Locked

    How to run

    A research, analysis or design project, so there's no code bundle: 1 step to carry it out with Handheld GPS / GNSS receiver, Soil-sampling protocol (0–15 cm, grid-based) and pH & EC meters, spectrophotometer, flame photometer, AAS, Kjeldahl distillation.

    The good part is behind this lock. Like every good viva answer.

    How to run is locked: 1 step.

  10. 1 min

    Future scope

    • Add boron, CEC and texture for a fuller fertility assessment.
    • Use regression kriging with terrain and satellite covariates to improve map accuracy.
    • Resample after five years to assess temporal change in organic carbon and zinc.
    • Link maps with crop-response trials to validate zone-wise recommendations.
    • Publish maps through a village-level web map for extension workers.
  11. 9 sources

    References

    1. Soil Health Card portal — Department of Agriculture & Farmers Welfare, Government of India
    2. Jackson, M. L. (1973). Soil Chemical Analysis. Prentice Hall of India, New Delhi.
    3. Walkley, A., & Black, I. A. (1934). An examination of the Degtjareff method for determining soil organic matter. Soil Science, 37(1), 29–38.
    4. Subbiah, B. V., & Asija, G. L. (1956). A rapid procedure for the estimation of available nitrogen in soils. Current Science, 25, 259–260.
    5. Olsen, S. R., Cole, C. V., Watanabe, F. S., & Dean, L. A. (1954). Estimation of available phosphorus in soils by extraction with sodium bicarbonate. USDA Circular 939.
    6. Lindsay, W. L., & Norvell, W. A. (1978). Development of a DTPA soil test for zinc, iron, manganese, and copper. Soil Science Society of America Journal, 42(3), 421–428.
    7. Cambardella, C. A., et al. (1994). Field-scale variability of soil properties in central Iowa soils. Soil Science Society of America Journal, 58(5), 1501–1511.
    8. gstat — Spatial and Spatio-Temporal Geostatistical Modelling (R package)
    9. QGIS User Guide

    Cite this bundle

    OnlyProjects. (2026). GPS-Based Soil Fertility Mapping of a Development Block: Macro- and Micronutrient Status with Ordinary Kriging: M.Sc Agriculture Soil Science project bundle [Educational resource]. https://onlyprojects.online/projects/msc-agri-soil-gps-soil-fertility-mapping-block-kriging

Slides, diagrams & files

12 slides. Titles are free; bullets, speaker notes and the .pptx unlock with the project.

  1. SLIDE 1

    GPS-Based Soil Fertility Mapping of <Block>

  2. SLIDE 2

    Why Map Soil Fertility

  3. SLIDE 3

    Objectives

  4. SLIDE 4

    Study Area

  5. SLIDE 5

    Sampling Protocol

  6. SLIDE 6

    Laboratory Methods

  7. SLIDE 7

    Soil Properties

  8. SLIDE 8

    Fertility Classes and Nutrient Index

  9. SLIDE 9

    Correlations

  10. SLIDE 10

    Semivariograms

  11. SLIDE 11

    Kriged Maps

  12. SLIDE 12

    Conclusions and Recommendations

Architecture diagram

1
flowchart TD
  A["Block boundary and 1 km grid in QGIS"] --> B["GPS-referenced composite sampling, 0-15 cm"]
  B --> C["Air-dry, grind, sieve 2 mm, label S001-S150"]
  C --> D["Lab analysis: pH, EC, OC, N, P, K, S"]
  C --> E["DTPA micronutrients: Zn, Fe, Cu, Mn on AAS"]
  D --> F["QC: blanks, duplicates, reference soil"]
  E --> F
  F --> G["Descriptive statistics and correlation"]
  G --> H["Ratings and Parker nutrient index"]
  G --> I["Semivariogram fitting in R gstat"]
  I --> J["Ordinary kriging and cross-validation"]
  J --> K["Classified maps in QGIS"]
  H --> L["Deficiency zones and fertiliser recommendations"]
  K --> L

Files

Viva questions & answers

3 of 15 questions free. Explain each answer in your own words before you move on.

  1. Concept

    What does available nitrogen by the alkaline permanganate method measure?

    It measures the readily mineralisable nitrogen: organic N that alkaline KMnO4 oxidises plus ammonium, distilled as ammonia and titrated. Subbiah and Asija designed it as a rapid index of nitrogen that the crop can draw on during the season, not total soil nitrogen.

  2. Concept

    Why Olsen's method for phosphorus and when would you use Bray's?

    Olsen's sodium bicarbonate extractant at pH 8.5 suits neutral to alkaline and calcareous soils because it controls calcium activity. In acid soils, where phosphorus is bound with iron and aluminium, Bray's acid-fluoride extractant is more appropriate, so the choice depends on soil pH in the block.

  3. Concept

    What is a semivariogram?

    A semivariogram plots half the average squared difference between pairs of samples against the distance separating them. It shows how similarity decreases with distance; the nugget reflects micro-scale variation and error, the sill the total variance, and the range the distance beyond which samples are no longer spatially related.

+12 more questions

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